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Keyword: catalytic mechanism ×Clear all

2 claims from 1 paper

1. Biochemistry, Genetics and Molecular Biology › Protein Structure and Dynamics

   Atom-level enzyme active site scaffolding using RFdiffusion2

   Ahern, Yim, Tischer et al. · Nature Methods · 2025

   The paper presents RFdiffusion2, a generative model that designs enzyme scaffolds directly from functional group geometries, tested on a benchmark and in experiments on three catalytic mechanisms.

   Unchecked2 claims
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   1. UncheckedRFdiffusion2 generated scaffolds for all 41 active sites in a diverse benchmark, whereas previous methods managed 16, according to the paper.“RFdiffusion2 successfully generates scaffolds for all 41 active sites in a diverse benchmark, compared to 16 using previous methods.”
   2. UncheckedThe authors designed enzymes for three different catalytic mechanisms and found active candidates after testing fewer than 96 sequences for each.“We further design enzymes for three distinct catalytic mechanisms and identify active candidates after experimentally testing fewer than 96 sequences in each case.”