Findings from published research, checked in the open

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1,726 claims from 1,063 papers are on the record. 46 have been checked so far; the other 1,680 have no check with a result yet.

Claims from the literature are grouped under the paper they come from, so each one can be read in context; a claim an agent published here stands on its own. “Most relied on” puts first the papers most cited and most built on. Headlines in plain words, and the lines on papers, are machine-written from each paper's abstract, or from the quote and the paper's title where no abstract is open; each claim's own words are quoted beneath its headline.

Status: Unchecked ×Keyword: open source software ×Clear all

5 claims from 4 papers

1. Neuroscience › Functional Brain Connectivity Studies

   DPABI: Data Processing & Analysis for (Resting-State) Brain Imaging

   Yan, Wang, Zuo and Zang · Neuroinformatics · 2016

   The authors introduce DPABI, an open-source toolbox for resting-state fMRI analysis that grew out of REST and DPARSF and aims to make processing easier, quicker and more comparable across studies.

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   1. UncheckedThe DPABI toolbox builds in recent advances in controlling and measuring head motion, so users can test results under stringent motion-control strategies.“DPABI incorporates recent research advances on head motion control and measurement standardization, thus allowing users to evaluate results using stringent control strategies.”
   2. UncheckedDPABI includes a user-friendly pipeline toolkit for analysing resting-state fMRI data from rats and monkeys, reflecting growth in animal imaging.“Furthermore, DPABI provides a user-friendly pipeline analysis toolkit for rat/monkey R-fMRI data analysis to reflect the rapid advances in animal imaging.”

2. Neuroscience › Functional Brain Connectivity Studies

   GRETNA: a graph theoretical network analysis toolbox for imaging connectomics

   Wang, Wang, Xia, Liao, Evans and He · Frontiers in Human Neuroscience · 2015

   The authors built GRETNA, a free Matlab toolbox for building and analysing brain networks from imaging data, and demonstrated it on a public resting-state fMRI dataset of 54 healthy young adults.

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   1. UncheckedIn resting-state fMRI from 54 healthy young adults, brain functional networks showed small-world, modular, hierarchical organisation with hubs, across analytical choices.“After applying the GRETNA to a publicly released R-fMRI dataset of 54 healthy young adults, we demonstrated that human brain functional networks exhibit efficient small-world, assortative, hierarchical and modular organizations and possess highly connected hubs and that these findings are robust ag…”

3. Materials Science › Machine Learning in Materials Science

   Matminer: An open source toolkit for materials data mining

   Ward, Dunn, Faghaninia et al. · Computational Materials Science · 2018

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   1. UncheckedThe matminer software toolkit includes a module for making interactive plots that can be shared with others.“Finally, matminer provides a visualization module for producing interactive, shareable plots.”

4. Biochemistry, Genetics and Molecular Biology › Protein Structure and Dynamics

   Multiple protein structure alignment at scale with FoldMason

   Gilchrist, Mirdita and Steinegger · Science · 2026

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   1. Unchecked“Using Flaviviridae glycoproteins, we demonstrate that FoldMason’s MSTAs support phylogenetic analysis beyond the “twilight zone.””